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SRX2194931: AFLP-seq of Calytrix tetragona: mature leaf
1 ION_TORRENT (Ion Torrent PGM) run: 20,511 spots, 2.6M bases, 1.6Mb downloads

Design: AFLP-seq (rest. enzyme digestion followed by selective amplification)
Submitted by: Norwegian Institute for Bioeconomy Research
Study: Case studies using AFLPseq of Acacia and Eucalyptus
show Abstracthide Abstract
Using minor modifications to the AFLPseq protocol, we successfully recovered variable and useful markers that were applied to studies examining different scales of biological organization–from within populations to phylogenetic questions to the genus level and above. Three case studies on Acacia and Eucalyptus generated genomic data across the taxonomic hierarchies including—demonstrating the detection of Acacia pinguifolia individuals used in restoration and their population origins, regional phylogeography of Acacia pycnantha and SNP marker conservatism across some 70 million years of divergence amongst Myrtaceae.
Sample:
SAMN05729952 • SRS1717107 • All experiments • All runs
Library:
Name: calytrix_tetragona_WAR-A-6_pgm1
Instrument: Ion Torrent PGM
Strategy: OTHER
Source: GENOMIC
Selection: other
Layout: SINGLE
Runs: 1 run, 20,511 spots, 2.6M bases, 1.6Mb
Run# of Spots# of BasesSizePublished
SRR430038520,5112.6M1.6Mb2018-10-12

ID:
3190175

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